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GitNexus\n\n**Graph-powered code intelligence for AI agents.** Index any codebase into a knowledge graph, then query it via MCP or CLI.\n\nWorks with **Cursor**, **Claude Code**, **Codex**, **Windsurf**, **Cline**, **OpenCode**, and any MCP-compatible tool.\n\n[![npm version](https://img.shields.io/npm/v/gitnexus.svg)](https://www.npmjs.com/package/gitnexus)\n[![License: PolyForm Noncommercial](https://img.shields.io/badge/License-PolyForm%20Noncommercial-blue.svg)](https://polyformproject.org/licenses/noncommercial/1.0.0/)\n\n---\n\n## Why?\n\nAI coding tools don't understand your codebase structure. They edit a function without knowing 47 other functions depend on it. GitNexus fixes this by **precomputing every dependency, call chain, and relationship** into a queryable graph.\n\n**Three commands to give your AI agent full codebase awareness.**\n\n## Quick Start\n\n```bash\n# Index your repo (run from repo root)\nnpx gitnexus analyze\n```\n\nThat's it. This indexes the codebase, installs agent skills, registers Claude Code hooks, and creates `AGENTS.md` / `CLAUDE.md` context files — all in one command.\n\nTo configure MCP for your editor, run `npx gitnexus setup` once — or set it up manually below.\n\n`gitnexus setup` auto-detects your editors and writes the correct global MCP config. You only need to run it once.\n\n### Editor Support\n\n| Editor | MCP | Skills | Hooks (auto-augment) | Support |\n|--------|-----|--------|---------------------|---------|\n| **Claude Code** | Yes | Yes | Yes (PreToolUse) | **Full** |\n| **Cursor** | Yes | Yes | — | MCP + Skills |\n| **Codex** | Yes | Yes | — | MCP + Skills |\n| **Windsurf** | Yes | — | — | MCP |\n| **OpenCode** | Yes | Yes | — | MCP + Skills |\n\n> **Claude Code** gets the deepest integration: MCP tools + agent skills + PreToolUse hooks that automatically enrich grep/glob/bash calls with knowledge graph context.\n\n### Community Integrations\n\n| Agent | Install | Source |\n|-------|---------|--------|\n| [pi](https://pi.dev) | `pi install npm:pi-gitnexus` | [pi-gitnexus](https://github.com/tintinweb/pi-gitnexus) |\n\n## MCP Setup (manual)\n\nIf you prefer to configure manually instead of using `gitnexus setup`:\n\n### Claude Code (full support — MCP + skills + hooks)\n\n```bash\n# macOS / Linux\nclaude mcp add gitnexus -- npx -y gitnexus@latest mcp\n\n# Windows\nclaude mcp add gitnexus -- cmd /c npx -y gitnexus@latest mcp\n```\n\n### Codex (full support — MCP + skills)\n\n```bash\ncodex mcp add gitnexus -- npx -y gitnexus@latest mcp\n```\n\n### Cursor / Windsurf\n\nAdd to `~/.cursor/mcp.json` (global — works for all projects):\n\n```json\n{\n  \"mcpServers\": {\n    \"gitnexus\": {\n      \"command\": \"npx\",\n      \"args\": [\"-y\", \"gitnexus@latest\", \"mcp\"]\n    }\n  }\n}\n```\n\n### OpenCode\n\nAdd to `~/.config/opencode/config.json`:\n\n```json\n{\n  \"mcp\": {\n    \"gitnexus\": {\n      \"command\": \"npx\",\n      \"args\": [\"-y\", \"gitnexus@latest\", \"mcp\"]\n    }\n  }\n}\n```\n\n## How It Works\n\nGitNexus builds a complete knowledge graph of your codebase through a multi-phase indexing pipeline:\n\n1. **Structure** — Walks the file tree and maps folder/file relationships\n2. **Parsing** — Extracts functions, classes, methods, and interfaces using Tree-sitter ASTs\n3. **Resolution** — Resolves imports and function calls across files with language-aware logic\n   - **Field & Property Type Resolution** — Tracks field types across classes and interfaces for deep chain resolution (e.g., `user.address.city.getName()`)\n   - **Return-Type-Aware Variable Binding** — Infers variable types from function return types, enabling accurate call-result binding\n4. **Clustering** — Groups related symbols into functional communities\n5. **Processes** — Traces execution flows from entry points through call chains\n6. **Search** — Builds hybrid search indexes for fast retrieval\n\nThe result is a **LadybugDB graph database** stored locally in `.gitnexus/` with full-text search and semantic embeddings.\n\n## MCP Tools\n\nYour AI agent gets these tools automatically:\n\n| Tool | What It Does | `repo` Param |\n|------|-------------|--------------|\n| `list_repos` | Discover all indexed repositories | — |\n| `query` | Process-grouped hybrid search (BM25 + semantic + RRF) | Optional |\n| `context` | 360-degree symbol view — categorized refs, process participation | Optional |\n| `impact` | Blast radius analysis with depth grouping and confidence | Optional |\n| `detect_changes` | Git-diff impact — maps changed lines to affected processes | Optional |\n| `rename` | Multi-file coordinated rename with graph + text search | Optional |\n| `cypher` | Raw Cypher graph queries | Optional |\n\n> With one indexed repo, the `repo` param is optional. With multiple, specify which: `query({query: \"auth\", repo: \"my-app\"})`.\n\n## MCP Resources\n\n| Resource | Purpose |\n|----------|---------|\n| `gitnexus://repos` | List all indexed repositories (read first) |\n| `gitnexus://repo/{name}/context` | Codebase stats, staleness check, and available tools |\n| `gitnexus://repo/{name}/clusters` | All functional clusters with cohesion scores |\n| `gitnexus://repo/{name}/cluster/{name}` | Cluster members and details |\n| `gitnexus://repo/{name}/processes` | All execution flows |\n| `gitnexus://repo/{name}/process/{name}` | Full process trace with steps |\n| `gitnexus://repo/{name}/schema` | Graph schema for Cypher queries |\n\n## MCP Prompts\n\n| Prompt | What It Does |\n|--------|-------------|\n| `detect_impact` | Pre-commit change analysis — scope, affected processes, risk level |\n| `generate_map` | Architecture documentation from the knowledge graph with mermaid diagrams |\n\n## CLI Commands\n\n```bash\ngitnexus setup                   # Configure MCP for your editors (one-time)\ngitnexus analyze [path]          # Index a repository (or update stale index)\ngitnexus analyze --force         # Force full re-index\ngitnexus analyze --embeddings    # Enable embedding generation (slower, better search)\ngitnexus analyze --skip-agents-md  # Preserve custom AGENTS.md/CLAUDE.md gitnexus section edits\ngitnexus analyze --verbose       # Log skipped files when parsers are unavailable\ngitnexus analyze --max-file-size 1024  # Skip files larger than N KB (default: 512, cap: 32768)\ngitnexus analyze --worker-timeout 60  # Increase worker idle timeout for slow parses\ngitnexus mcp                     # Start MCP server (stdio) — serves all indexed repos\ngitnexus serve                   # Start local HTTP server (multi-repo) for web UI\ngitnexus index                   # Register an existing .gitnexus/ folder into the global registry\ngitnexus list                    # List all indexed repositories\ngitnexus status                  # Show index status for current repo\ngitnexus clean                   # Delete index for current repo\ngitnexus clean --all --force     # Delete all indexes\ngitnexus wiki [path]             # Generate LLM-powered docs from knowledge graph\ngitnexus wiki --model <model>    # Wiki with custom LLM model (default: gpt-4o-mini)\n\n# Repository groups (multi-repo / monorepo service tracking)\ngitnexus group create <name>                                   # Create a repository group\ngitnexus group add <group> <groupPath> <registryName>          # Add a repo to a group. <groupPath> is a hierarchy path (e.g. hr/hiring/backend); <registryName> is the repo's name from the registry (see `gitnexus list`)\ngitnexus group remove <group> <groupPath>                      # Remove a repo from a group by its hierarchy path\ngitnexus group list [name]                                     # List groups, or show one group's config\ngitnexus group sync <name>                                     # Extract contracts and match across repos/services\ngitnexus group contracts <name>  # Inspect extracted contracts and cross-links\ngitnexus group query <name> <q>  # Search execution flows across all repos in a group\ngitnexus group status <name>     # Check staleness of repos in a group\n```\n\n## Remote Embeddings\n\nSet these env vars to use a remote OpenAI-compatible `/v1/embeddings` endpoint instead of the local model:\n\n```bash\nexport GITNEXUS_EMBEDDING_URL=http://your-server:8080/v1\nexport GITNEXUS_EMBEDDING_MODEL=BAAI/bge-large-en-v1.5\nexport GITNEXUS_EMBEDDING_DIMS=1024          # optional, default 384\nexport GITNEXUS_EMBEDDING_API_KEY=your-key   # optional, default: \"unused\"\ngitnexus analyze . --embeddings\n```\n\nWorks with Infinity, vLLM, TEI, llama.cpp, Ollama, LM Studio, or OpenAI. When unset, local embeddings are used unchanged.\n\n## Multi-Repo Support\n\nGitNexus supports indexing multiple repositories. Each `gitnexus analyze` registers the repo in a global registry (`~/.gitnexus/registry.json`). The MCP server serves all indexed repos automatically.\n\n## Supported Languages\n\nTypeScript, JavaScript, Python, Java, C, C++, C#, Go, Rust, PHP, Kotlin, Swift, Ruby\n\n### Language Feature Matrix\n\n| Language | Imports | Named Bindings | Exports | Heritage | Type Annotations | Constructor Inference | Config | Frameworks | Entry Points |\n|----------|---------|----------------|---------|----------|-----------------|---------------------|--------|------------|-------------|\n| TypeScript | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |\n| JavaScript | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ | ✓ | ✓ |\n| Python | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |\n| Java | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |\n| Kotlin | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |\n| C# | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |\n| Go | ✓ | — | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |\n| Rust | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |\n| PHP | ✓ | ✓ | ✓ | — | ✓ | ✓ | ✓ | ✓ | ✓ |\n| Ruby | ✓ | — | ✓ | ✓ | — | ✓ | — | ✓ | ✓ |\n| Swift | — | — | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |\n| C | — | — | ✓ | — | ✓ | ✓ | — | ✓ | ✓ |\n| C++ | — | — | ✓ | ✓ | ✓ | ✓ | — | ✓ | ✓ |\n\n**Imports** — cross-file import resolution · **Named Bindings** — `import { X as Y }` / re-export tracking · **Exports** — public/exported symbol detection · **Heritage** — class inheritance, interfaces, mixins · **Type Annotations** — explicit type extraction for receiver resolution · **Constructor Inference** — infer receiver type from constructor calls (`self`/`this` resolution included for all languages) · **Config** — language toolchain config parsing (tsconfig, go.mod, etc.) · **Frameworks** — AST-based framework pattern detection · **Entry Points** — entry point scoring heuristics\n\n## Agent Skills\n\nGitNexus ships with skill files that teach AI agents how to use the tools effectively:\n\n- **Exploring** — Navigate unfamiliar code using the knowledge graph\n- **Debugging** — Trace bugs through call chains\n- **Impact Analysis** — Analyze blast radius before changes\n- **Refactoring** — Plan safe refactors using dependency mapping\n\nInstalled automatically by both `gitnexus analyze` (per-repo) and `gitnexus setup` (global).\n\n## Requirements\n\n- Node.js >= 18\n- Git repository (uses git for commit tracking)\n\n## Release candidates\n\nStable releases publish to the default `latest` dist-tag. When a pull request\nwith non-documentation changes merges into `main`, an automated workflow also\npublishes a prerelease build under the `rc` dist-tag, so early adopters can\ntry in-flight fixes without waiting for the next stable cut. (Docs-only\nmerges are skipped.)\n\n```bash\n# Try the latest release candidate (pre-stable — may change at any time)\nnpm install -g gitnexus@rc\n# — or —\nnpx gitnexus@rc analyze\n```\n\nRelease-candidate versions follow the standard semver prerelease format\n`X.Y.Z-rc.N`, where `X.Y.Z` is the next stable target (bumped from the\ncurrent `latest` by patch by default; `minor` or `major` when kicking off a\nbigger cycle) and `N` increments per published rc. Example sequence:\n`1.6.2-rc.1`, `1.6.2-rc.2`, …, then once `1.6.2` ships stable,\n`1.6.3-rc.1`. See the [Releases page](https://github.com/abhigyanpatwari/GitNexus/releases)\nfor the full list; stable `latest` is unaffected.\n\n## Troubleshooting\n\n### `Cannot destructure property 'package' of 'node.target' as it is null`\n\nThis crash was caused by a dependency URL format that is incompatible with\ncertain npm/arborist versions ([npm/cli#8126](https://github.com/npm/cli/issues/8126)).\nIt is fixed in **gitnexus v1.6.2+**. Upgrade to the latest version:\n\n```bash\nnpx gitnexus@latest analyze          # always uses the newest release\n# — or —\nnpm install -g gitnexus@latest       # upgrade a global install\n```\n\nIf you still hit npm install issues after upgrading, these generic workarounds\nmay help:\n\n```bash\nnpm install -g npm@latest            # update npm itself\nnpm cache clean --force              # clear a possibly corrupt cache\n```\n\n### Installation fails with native module errors\n\nSome optional language grammars (Dart, Kotlin, Swift) require native compilation. If they fail, GitNexus still works — those languages will be skipped.\n\nIf `npm install -g gitnexus` fails on native modules:\n\n```bash\n# Ensure build tools are available (Linux/macOS)\n# Ubuntu/Debian: sudo apt install python3 make g++\n# macOS: xcode-select --install\n\n# Retry installation\nnpm install -g gitnexus\n```\n\n### Analyze warns about unavailable FTS or VECTOR extensions\n\nGitNexus uses optional DuckDB extensions for BM25 and vector search. The `gitnexus serve` and MCP read paths only ever try to `LOAD` the extensions — they never block on a network install. The `analyze` command, by default, attempts one bounded out-of-process `INSTALL` if `LOAD` fails and proceeds even when that install times out, so the index is always written to disk; BM25/vector search degrade gracefully until the extensions become available.\n\nConfigure the behavior with two environment variables:\n\n| Variable | Values | Default | Effect |\n|----------|--------|---------|--------|\n| `GITNEXUS_LBUG_EXTENSION_INSTALL` | `auto`, `load-only`, `never` | `auto` | `auto` runs one bounded INSTALL if LOAD fails. `load-only` only uses already-installed extensions (recommended for offline / firewalled environments). `never` skips optional extensions entirely. |\n| `GITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS` | positive integer | `15000` | Wall-clock budget for the out-of-process `INSTALL` child before it is killed. |\n\n```bash\n# Offline/airgapped: never reach the network for extensions\nGITNEXUS_LBUG_EXTENSION_INSTALL=load-only npx gitnexus analyze\n\n# Slow network: give extension downloads more time\nGITNEXUS_LBUG_EXTENSION_INSTALL_TIMEOUT_MS=30000 npx gitnexus analyze\n```\n\n### Analysis runs out of memory\n\nFor very large repositories:\n\n```bash\n# Increase Node.js heap size\nNODE_OPTIONS=\"--max-old-space-size=16384\" npx gitnexus analyze\n\n# Exclude large directories\necho \"vendor/\" >> .gitnexusignore\necho \"dist/\" >> .gitnexusignore\n```\n\n### Large files are being skipped\n\nBy default the walker skips files larger than **512 KB** (see log line `Skipped N large files (>512KB)`). Raise the threshold via either the CLI flag or the environment variable — both accept a value in **KB**:\n\n```bash\n# CLI flag (takes precedence over the env var)\nnpx gitnexus analyze --max-file-size 2048     # skip only files > 2 MB\n\n# Environment variable (persists across commands)\nexport GITNEXUS_MAX_FILE_SIZE=2048\nnpx gitnexus analyze\n```\n\nValues above **32768 KB (32 MB)** are clamped to the tree-sitter parser ceiling; invalid values fall back to the 512 KB default with a one-time warning. When an override is active, `analyze` prints the effective threshold in its startup banner (e.g. `GITNEXUS_MAX_FILE_SIZE: effective threshold 2048KB (default 512KB)`).\n\n### Analyze reports a worker timeout\n\nWorker parse timeouts are recoverable. GitNexus retries stalled worker jobs with backoff, splits large jobs to isolate slow files, and falls back to the sequential parser when needed. If a large repository needs more time per worker job, use either:\n\n```bash\n# CLI flag, in seconds\nnpx gitnexus analyze --worker-timeout 60\n\n# Environment variable, in milliseconds\nexport GITNEXUS_WORKER_SUB_BATCH_TIMEOUT_MS=60000\nnpx gitnexus analyze\n```\n\nFor repositories with very large source files, `GITNEXUS_WORKER_SUB_BATCH_MAX_BYTES` controls the worker job byte budget. The default is **8388608 bytes (8 MB)**.\n\n## Privacy\n\n- All processing happens locally on your machine\n- No code is sent to any server\n- Index stored in `.gitnexus/` inside your repo (gitignored)\n- Global registry at `~/.gitnexus/` stores only paths and metadata\n\n## Web UI\n\nGitNexus also has a browser-based UI at [gitnexus.vercel.app](https://gitnexus.vercel.app) — 100% client-side, your code never leaves the browser.\n\n**Local Backend Mode:** Run `gitnexus serve` and open the web UI locally — it auto-detects the server and shows all your indexed repos, with full AI chat support. No need to re-upload or re-index. The agent's tools (Cypher queries, search, code navigation) route through the backend HTTP API automatically.\n\n## License\n\n[PolyForm Noncommercial 1.0.0](https://polyformproject.org/licenses/noncommercial/1.0.0/)\n\nFree for non-commercial use. Contact for commercial licensing.","users":{}}